Protein bioinformatics : from protein modifications and networks to proteomics /

[ book - latin ] Series: Methods in molecular biology, 1064-3745 ; . 1558 | Springer protocols Published by : springer science, (washington:) Physical details: xiv, 472 pages : illustrations ; 26 cm. ISBN:9781493967810; 1493967819; 1493967835; 9781493967834. Year: 2016 Item type: book - latin
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Includes bibliographical references and index.

Protein bioinformatics databases and resources / Chuming Chen, Hongzhan Huang, and Cathy H. Wu -- UniProt protein knowledgebase / Sangya Pundir, Maria J. Martin, and Claire O'Donovan -- Tutorial on protein ontology resources / Cecilia N. Arighi, Harold Drabkin, Karen R. Christie, Karen E. Ross, and Darren A. Natale -- CATH-Gene3D : generation of the resource and its use in obtaining structural and functional annotations for protein sequences / Natalie L. Dawson, Ian Sillitoe, Jonathan G. Lees, Su Datt Lam, and Christine A. Orengo -- Structure-based virtual screening / Qingliang Li and Salim Shah -- Bioinformatics analysis of protein phosphorylation in plant systems biology using P3DB / Qiuming Yao and Dong Xu -- Navigating the glycome space and connecting the glycoproteome / Matthew P. Campbell, Robyn A. Peterson, Elisabeth Gasteiger, Julien Mariethoz, Frederique Lisacek, and Nicolle H. Packer -- Impact of nonsynonymous single-nucleotide variations on post-translational modification sites in human proteins / Naila Gulzar, Hayley Dingerdissen, Cheng Yan, and Raja Mazumder -- Analysis of cysteine redox post-translational modifications in cell biology and drug pharmacology / Revati Wani and Brion W. Murray -- Analysis of protein phosphorylation and its functional impact on protein-protein interactions via text mining of the scientific literature / Qinghua Wang, Karen E. Ross, Hongzhan Huang, Jia Ren, Gang Li, K. Vijay-Shanker, Cathy H. Wu, and Cecilia N. Arighi -- Functional interaction network construction and analysis for disease discovery / Guanming Wu and Robin Haw -- Prediction of protein interactions by structural matching : prediction of PPI networks and the effects of mutations on PPIs that combines sequence and structural information / Nurcan Tuncbag, Ozlem Keskin, Ruth Nussinov, and Attila Gursoy -- NDEx : a community resource for sharing and publishing of biological networks / Rudolf T. Pillich, Jing Chen, Vladimir Rynkov, David Welker, and Dexter Pratt -- Bioinformatics analysis of functional associations of PTMs / Pablo Minguez and Peer Bork -- Bioinformatics analysis of PTM-modified protein interaction networks and complexes / Jonathan Woodsmith, Ulrich Stelzl, and Arunachalam Vinayagam -- iPTMnet : integrative bioinformatics for studying PTM networks / Karen E. Ross, Hongzhan Huang, Jia Ren, Cecilia N. Arighi, Gang Li, Catalina O. Tudor, Mengxi Lv, Jung-Youn Lee, Sheng-Chih Chen, K. Vijay-Shanker, and Cathy H. Wu -- Protein identification from tandem mass spectra by database searching / Nathan J. Edwards -- Bioinformatics analysis of top-down mass spectrometry data with ProSight Lite / Caroline J. DeHart, Ryan T. Fellers, Luca Fornelli, Neil L. Kelleher, and Paul M. Thomas -- Mapping biological networks from quantitative data-independent acquisition mass spectrometry : data to knowledge pipelines / Erin L. Crowgey, Andrea Matlock, Vidya Venkatraman, Justyna Fert-Bober, and Jennifer E. Van Eyk -- Annotation of alternatively spliced proteins and transcripts with protein-folding algorithms and isoform-level functional networks / Hongdong Li, Yang Zhang, Yuanfang Guan, Rajasree Menon, and Gilbert S. Omenn -- Computational and statistical methods for high-throughput mass spectrometry-based PTM analysis / Veit Schwämmle and Marc Vaudel -- Cross-species PTM mapping from phosphoproteomic data / Rima Chaudhuri and Jean Yee Hwa Yang.

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